FastQCFastQC Report
Thu 19 Jan 2023
EGAF00007816525

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007816525
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences331011
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGCGCAATGTATGCTGCTGATGCTCGCCGACCGTTGACTATTCTCTAC10110.305427916292812No Hit
ATTGCGCAATGCTGCTGATGCTCGCCGACCGTTGACTATTCTCTACAAAC8630.26071641123708883No Hit
TCCATATAGTCACTCCAGGTTTATGGAGGGTTCTTCTACTATTAGGACTT7380.22295331575083607No Hit
GCTCTAAGCCTCCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCT5880.1776376011673328No Hit
CTCCTACTCCTGCTCGCATCTGCTATAGTGGAGGCCGGAGCAGGAACAGG5100.1540734295839111No Hit
ATTCTATACCAACACCTATTCTGATTTTTCGGTCACCCTGAAGTTTATAT4810.14531239143110047No Hit
GGTCTAGGGTGTAGCCTGAGAATAGGGGAAATCAGTGAATGAAGCCTCCT4740.14319765808387033No Hit
TGCTAATACAATGCCAGTCAGGCCACCTACGGTGAAAAGAAAGATGAATC4590.13866608662552No Hit
ATTGCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCGTATGCTGCTG4540.1371555628060699No Hit
ACGTAGTACGTGTCGTGTAGTACGATGTCTAGTGATGAGTTTGCTAATAC4180.1262797913060291No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG4070.12295663890323887No Hit
CTATACTACTAACAGACCGCAACCTCAACACCACCTTCTTCGACCCCGCC4060.12265453413934885No Hit
GTGTAGTACGATGTCTAGTGATGAGTTTGCTAATACAATGCCAGTCAGGC3950.1193313817365586No Hit
GTGTATGAGTTGGTCGTAGCGGAATCGGGGGTATGCTGTTCGAATTCATA3950.1193313817365586No Hit
ATCTTAGGGGCCATCAATTTCATCACAACAATTATCAATATAAAACCCCC3630.10966402929207791No Hit
ATCTGTCTCTTATACACATCTCCGAGCCCACGAGACCGGAATCCAAATCT3580.1081535054726278No Hit
CATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATG3510.10603877212539765No Hit
CTCCAGGTTTATGGAGGGTTCTTCTACTATTAGGACTTTTCGCTTCGAAG3490.1054345625976176No Hit
GCATAATATAGCAAGGACTAACCCCTATACCTTCTGCATAATGAATTAAC3470.10483035306983757No Hit
GGTATGGTCTGAGCTATGATATCAATTGGCTTCCTAGGGTTTATCGTGTG3410.10301772448649742No Hit
TAGTAATACCCATCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTA3370.10180930543093734No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)