FastQCFastQC Report
Wed 18 Jan 2023
EGAF00007816542

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007816542
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19059
Sequences flagged as poor quality0
Sequence length151
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGC3121.6370218794270424No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATAAGAGTGAGGTGGG2701.4166535495041714No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATAAGAGTGAGGTGGT2021.0598667296290467No Hit
GCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1720.9024607796841386No Hit
GCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGATAAGAGTGAG1440.755548559735558No Hit
CATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGA1250.6558581247704497No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1220.6401175297759589No Hit
AGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATAC1210.6348706647777953No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGC600.31481189988981584No Hit
CAATCTGTCTCTTATACACATCTGACGCTGCCGACGATAAGAGTGAGGTG520.27283697990450706No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG510.26759011490634343No Hit
AGCATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT460.24135578991552548No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG440.23086205991919828No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGC430.22561519492103466No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGC410.21512146492470746No Hit
GCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT410.21512146492470746No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGG390.2046277349283803No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCA390.2046277349283803No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACC370.1941340049320531No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCC340.1783934099375623No Hit
GCATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGATAAGA330.1731465449393987No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGC320.1678996799412351No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATAAGAGTGAGGTGTA310.16265281494307152No Hit
TTTTTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGATAAGA310.16265281494307152No Hit
GCAGCATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATC300.15740594994490792No Hit
ATACGAGCATCAGCAGCATACGAGCATCAGCAGCATACGAGCATCAGCAG300.15740594994490792No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCG290.15215908494674432No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCAA280.14691221994858072No Hit
GCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCAAAA260.13641848995225353No Hit
CAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT260.13641848995225353No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATAAGAGTGAGGTGTT240.12592475995592634No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATAAGAGTGAGGTGTG230.12067789495776274No Hit
CAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCAA220.11543102995959914No Hit
GTATAAGAGACAGATTGCGCAATCTGTCTCTTATACACATCTGACGCTGC220.11543102995959914No Hit
GTGTATAAGAGACAGATTGCGCAATCTGTCTCTTATACACATCTGACGCT220.11543102995959914No Hit
CAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCAAT220.11543102995959914No Hit
GCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCAAAA210.11018416496143554No Hit
GCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCAAAAT200.10493729996327195No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAC200.10493729996327195No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCC200.10493729996327195No Hit
GCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCAATAT200.10493729996327195No Hit
CACGAGCATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTT200.10493729996327195No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)