FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007820855

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007820855
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484061213
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGCGAAATCTCGTATG26287580.5430631352816115TruSeq Adapter, Index 6 (97% over 35bp)
AGAACTCAGAAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT20399440.4214227344011552No Hit
AGAACTCAGAATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA13102280.27067403146799945No Hit
AGAACTCAGAAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC6817350.14083652680513364No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)