FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007820856

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007820856
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484061213
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGCCTCTATGTGTAGATCTC26439460.5462007549859195Illumina Single End PCR Primer 1 (96% over 31bp)
AGAACTCAGAAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT17509900.36172904438017844No Hit
AGAACTCAGAATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA12956830.26766924620337224No Hit
AGAACTCAGAAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC6035070.12467576079060894No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)