FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007820867

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007820867
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465250672
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATTTTTTAGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT14665860.3152249074021757No Hit
ATATTTTTTAGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA13188870.2834787952761947No Hit
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC12542500.26958585456916867No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGCGAAATCTCGTATG9415710.20237928855694376TruSeq Adapter, Index 6 (97% over 35bp)
ATATTTTTTAGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC4731060.10168840766338538No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)