FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007820868

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007820868
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465250672
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC14202750.30527091855549215No Hit
ATATTTTTTAGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT12710240.27319122281676145No Hit
ATATTTTTTAGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA12459830.26780896299274987No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTACGTCCTGGTGTAGATCTC10182780.21886652965436232Illumina Single End PCR Primer 1 (96% over 32bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)