FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007820869

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007820869
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472305008
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATTTTTTAGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT15137850.3205100463385305No Hit
ATATTTTTTAGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA13656500.2891457801353654No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGCGAAATCTCGTATG10027780.2123157669333881TruSeq Adapter, Index 6 (97% over 35bp)
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC7966370.1686700302784001No Hit
ATATTTTTTAGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC4901310.1037742542844263No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)