FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007820877

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007820877
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486637310
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCTCTACTATCTCGTATG24394880.5012948966037971TruSeq Adapter, Index 8 (97% over 35bp)
GGCCGGAACATGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT16697400.343117957807222No Hit
GGCCGGAACATTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA8009450.16458766796980692No Hit
GGCCGGAACATGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5260120.1080911778013897No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)