FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007820900

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007820900
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484979837
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGCTATAGTGTAGATCTC27810240.5734308496623128Illumina Single End PCR Primer 1 (96% over 33bp)
TATAGATACGGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT12933070.26667232353414316No Hit
TATAGATACGGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA9370650.19321731101163284No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)