FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007820913

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007820913
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485361632
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGATTCCATCTCGTATG23706750.4884347759898747TruSeq Adapter, Index 7 (97% over 37bp)
GGTCCTTCGATGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT16383140.33754501633124556No Hit
GGTCCTTCGATTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA10158080.2092888957485622No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)