FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007820925

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007820925
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502684829
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACAGCGATAGATCTCGTATG12346020.24560160338556788TruSeq Adapter, Index 1 (97% over 35bp)
GAGTATAGGGTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT11685120.2324542004429579No Hit
GAGTATAGGGTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA6694660.1331780792612701No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)