FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007820930

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007820930
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470047943
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGGGAAACTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT15138650.32206608337396764No Hit
CCTGGGAAACTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA8918580.18973766682348828No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTCAGAGCCGTGTAGATCTC7899220.1680513683260603Illumina Single End PCR Primer 1 (96% over 31bp)
CCTGGGAAACTGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5628150.1197356585389844No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)