FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007820931

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007820931
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463700010
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGGGAAACTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT16766330.36157708946350897No Hit
CCTGGGAAACTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA8596600.18539141286626237No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGATTCCATCTCGTATG6682710.1441170984663123TruSeq Adapter, Index 7 (97% over 37bp)
CCTGGGAAACTGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC6155330.1327437970078974No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)