FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007820949

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007820949
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508135124
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCTAAACGCTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT31487890.6196755255202551No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTAATGCGCATCTCGTATG23633000.46509282440392763TruSeq Adapter, Index 3 (97% over 35bp)
CCCTAAACGCTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA23344710.45941933350783287No Hit
CCCTAAACGCTGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC6112650.12029575818104635No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)