FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007820951

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007820951
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451661030
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCTAAACGCTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT25258720.5592406322945329No Hit
CCCTAAACGCTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA18227490.4035657005874516No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTAATGCGCATCTCGTATG15917590.35242336492922577TruSeq Adapter, Index 3 (97% over 35bp)
CCCTAAACGCTGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5047920.11176346119566702No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)