FastQCFastQC Report
Tue 7 May 2024
EGAF00007822096

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007822096
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9572
Total Bases1.4 Mbp
Sequences flagged as poor quality0
Sequence length151
%GC56

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTATAAGAGACAGATTGCGCAATCTGTCTCTTATACACATCTGACGCT3573.7296280819055583No Hit
GTATAAGAGACAGATTGCGCAATCTGTCTCTTATACACATCTGACGCTGC2052.141663184287505No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGACGCTTGTGTTGTGGG1011.0551608859172585No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGACGCGTGTGTTGTGGG750.783535311324697No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGACGCTTGTGTTGTGGT510.532804011700794No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT500.5223568742164647No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGC400.41788549937317176No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG380.3969912244045131No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGACGCGTGTGTTGTGGT350.3656498119515253No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGACGCTTGTGTTGTGTG330.3447555369828667No Hit
GATGTGTATAAGAGACAGATTGCGCAATCTGTCTCTTATACACATCTGAC300.3134141245298788No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGG280.29251984956122024No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGC270.28207271207689094No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCA260.27162557459256165No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG260.27162557459256165No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGACGCTTGTGTTGTGTT260.27162557459256165No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGC250.26117843710823235No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCG250.26117843710823235No Hit
CAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCAAT250.26117843710823235No Hit
GCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT220.22983702465524447No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGACGCGTGTGGTGTGGG210.21938988717091515No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGACGCTTGTGTTGTGTA190.19849561220225656No Hit
TTTTTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGACGCTT180.1880484747179273No Hit
CAATCTGTCTCTTATACACATCTGACGCTGCCGACGACGCTTGTGTTGTG170.177601337233598No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGACGCGTGTGTTGTGTG170.177601337233598No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGCA170.177601337233598No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGACGCTTGTGGTGTGGG170.177601337233598No Hit
CAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCAA160.1671541997492687No Hit
CGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT160.1671541997492687No Hit
GCTCTAAGACAAAAATCTTGCCAACCTGAGGCCGAATGTGCTGATGTACT140.14625992478061012No Hit
GCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGACGCTTGTGTT140.14625992478061012No Hit
GCATACATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGAC140.14625992478061012No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCAA130.13581278729628082No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGC130.13581278729628082No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGACGCGTGTGTTGTGTT120.12536564981195153No Hit
CAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGCAA120.12536564981195153No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGACGCGTGGGTTGTGGG110.11491851232762224No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGCA110.11491851232762224No Hit
CAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCAA110.11491851232762224No Hit
CAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCAAA110.11491851232762224No Hit
GCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGACGCGTGTGTT110.11491851232762224No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGCAA110.11491851232762224No Hit
GCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCAATAT100.10447137484329294No Hit
GCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCAATGTGT100.10447137484329294No Hit
CAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCAAAA100.10447137484329294No Hit
CAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGAA100.10447137484329294No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC100.10447137484329294No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)