FastQCFastQC Report
Tue 7 May 2024
EGAF00007822142

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007822142
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15878
Total Bases2.3 Mbp
Sequences flagged as poor quality0
Sequence length151
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTATAAGAGACAGATTGCGCAATCTGTCTCTTATACACATCTGACGCT8265.20216651971281No Hit
GTATAAGAGACAGATTGCGCAATCTGTCTCTTATACACATCTGACGCTGC5163.2497795692152662No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGACCAACGAATAGTGGT3422.1539236679682583No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGACCAACGAATAGTGTA3242.040559264390981No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGACCAACGAATAGTGTT3031.908300793550825No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGACCAACGAATAGTGGA2061.2973926187177227No Hit
GCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGACCAACGAATA1150.7242725784103792No Hit
GCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT990.6235042196750221No Hit
CAATCTGTCTCTTATACACATCTGACGCTGCCGACGACCAACGAATAGTG840.5290338833606247No Hit
CCTTTTCTTTTCACATCCAGGTTCCTTCCCTCTCCATATCACCTGAGGAT830.522735860939665No Hit
GATGTGTATAAGAGACAGATTGCGCAATCTGTCTCTTATACACATCTGAC800.5038417936767855No Hit
TTTTTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGACCAAC560.35268925557374986No Hit
TCTTCGATAATCATTAGACTCTTTCTTTTAACGAGCCTCCTGCTTCATTC540.3400932107318302No Hit
GCATACATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGAC410.2582189192593526No Hit
CATCCATATCGGTCTCTTTGTCTATTTCCTTTACTTTATCCCCCCCATGA390.24562287441743294No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT390.24562287441743294No Hit
TCCTGCTTCATTCTTTCAGCCTCTTCTGTTTATTGTCTTCTTTCCCCCGT360.22672880715455349No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGC330.20783473989167403No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGACCAACGAATAGTGGG330.20783473989167403No Hit
GCAGCATACATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGAC320.20153671747071422No Hit
TCATTAGACTCTTTCTTTTAACGAGCCTCCTGCTTCATTCTTTCAGCCTC310.19523869504975436No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG310.19523869504975436No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG310.19523869504975436No Hit
GCATATGGAGAGGACTCATCTCGGTCAGCCTTCACCTTCATCCCACCAGT260.16374858294495528No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGC250.15745056052399548No Hit
ACATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGACCAAC240.15115253810303564No Hit
CCATATCACCTGAGGATTCTCTTTTTCCATCCTTCTTCGATAATCATTAG240.15115253810303564No Hit
GATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGACCAACG230.14485451568207583No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCA230.14485451568207583No Hit
TTTTTTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGACCAA220.13855649326111602No Hit
TGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGACCAACGAAT220.13855649326111602No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCG220.13855649326111602No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGG210.13225847084015618No Hit
CCGTATAGAGTGTCCTACAACCCCAACAAGCAAGCTTGTTGGTTTGGGCT210.13225847084015618No Hit
CTCCATATCACCTGAGGATTCTCTTTTTCCATCCTTCTTCGATAATCATT210.13225847084015618No Hit
GCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT200.12596044841919637No Hit
CTCTTAGAGTTGTACCTGATTTTGTTACCAGTTTTCATCCGGATCCACTG190.11966242599823655No Hit
AGCATACATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGA180.11336440357727674No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGACCAACGAATAGTGTG180.11336440357727674No Hit
CCTCTAGACTCCGCCATACGCCATTCACCATCTCAGCGTCCCTGGACGGC180.11336440357727674No Hit
CTTCTGTACTCTCCCTGTTCTCCTCCGCTCTTTTCTTTTTTTTCTTCTTT170.10706638115631692No Hit
CATATGGAGAGGACTCATCTCGGTCAGCCTTCACCTTCATCCCACCAGTC170.10706638115631692No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGC170.10706638115631692No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCG160.10076835873535711No Hit
CAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCAA160.10076835873535711No Hit
CTTTCAGCCTCTTCTGTTTATTGTCTTCTTTCCCCCGTCTTTGGCGTCAC160.10076835873535711No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)