FastQCFastQC Report
Tue 7 May 2024
EGAF00007822329

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007822329
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4391
Total Bases663 kbp
Sequences flagged as poor quality0
Sequence length151
%GC60

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGCGCAATCTGTCTCTTATACACCTGTCTCTTATACACATCTCCGAGC2174.941926668184924No Hit
ATTGCGCAATCTGTCTCTTATACCTGTCTCTTATACACATCTCCGAGCCC1152.6189933955818723No Hit
ATTGCGCAATGATTCTCCGGGGGAATTGACGGGGGCCTGCACAAGCGGTG340.7743110908676839No Hit
ATTGCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA310.7059895240264177No Hit
ATTGCGCAATGGGCACGTGGGGATGTGCCTGCCGCCATTGCCTTCTTCAA250.5693463903438852No Hit
ATTGCGCAATCTGTCTCTTATACACATCCTGTCTCTTATACACATCTCCG240.5465725347301298No Hit
ATTGCGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACCCGACGCAT110.2505124117513095No Hit
ATTGCGCAATGGCTCAGCGGGGATAGAAAATCAAGGAAGTTGTACATAAT90.20496470052379867No Hit
ATTGCGCAAAAACTGTCTCTTATACACATCTCCGAGCCCACGAGACCCGA70.15941698929628786No Hit
ATTGCGCAATGTATGCCTGTCTCTTATACACATCTCCGAGCCCACGAGAC60.13664313368253245No Hit
GGGGTGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60.13664313368253245No Hit
ATTGCGCAATGTATGCTCTGTCTCTTATACACATCTCCGAGCCCACGAGA50.11386927806877704No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)