FastQCFastQC Report
Tue 7 May 2024
EGAF00007822333

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007822333
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1412
Total Bases213.2 kbp
Sequences flagged as poor quality0
Sequence length151
%GC70

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGCGCAATCTGTCTCTTATACACCTGTCTCTTATACACATCTCCGAGC1228.640226628895183No Hit
ATTGCGCAATCTGTCTCTTATACCTGTCTCTTATACACATCTCCGAGCCC513.6118980169971673No Hit
ATTGCGCAATCTGTCTCTTATACACATCCTGTCTCTTATACACATCTCCG120.84985835694051No Hit
ATTGCGCAATGGGGGACACGGGGAGATAGACTGCGTCGCCCGGGTACCCG80.56657223796034No Hit
ATTGCGCAATGCTGTACACGGGGTGTCGTGAGATGTTGGGTTAAGTCCCG70.49575070821529743No Hit
GGGGTGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG70.49575070821529743No Hit
ATTGCGCAATGGAGAGTACGGGTATGGTTGGACAGTGCGGCGGAGCCAAT60.424929178470255No Hit
GGGGGGTGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50.3541076487252125No Hit
ATTGCGCAATGCAGCCAGTGGGGACGAGAAGGGGGTATAGAAGAGGCAGG50.3541076487252125No Hit
ATTGCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA50.3541076487252125No Hit
ATTGCGCAATCTGTCTCTTATACACCGGTCTCTTATACACATCTCCGAGC50.3541076487252125No Hit
ATTGCGCAATGCGCTCACCGGGCCGGGTTGCGGACAGTGTCTGGTGGGTA50.3541076487252125No Hit
GGGGGCTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50.3541076487252125No Hit
ATTGCGCAAGCAGAAGACGGCATACGAGATTCTGACTGTGACTGGAGTTC40.28328611898017RNA PCR Primer, Index 40 (96% over 29bp)
ATTGCGCAATCTGTCTCTTATACACCTGGCTCTTATACACATCTCCGAGC40.28328611898017No Hit
ATTGCGCAATGTCGTCGTGGGGGGGCGTATGGTGGATGCCTAGGCACTTA30.2124645892351275No Hit
ATTGCGCAATGTGGCGGCCGGGACTGTGAGACGACAGGCTGTGGATGTGT30.2124645892351275No Hit
ATTGCGCAATCTGTCTCTTATACACCTGTCTCGTATACACATCTCCGAGC30.2124645892351275No Hit
ATTGCGCAATATGTCTCTTATACACCTGTCTCTTATACACATCTCCGAGC30.2124645892351275No Hit
GGGGTCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30.2124645892351275No Hit
ATTGCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCGTATGCTGCTG30.2124645892351275No Hit
ATTGCGCAATCAGTCTCTTATACACCTGTCTCTTATACACATCTCCGAGC30.2124645892351275No Hit
GGGGGCGGGCTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30.2124645892351275No Hit
GCGGGCGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30.2124645892351275No Hit
ATTGCGCAATGTATGCTGCTGCTGTCTCTTATACACATCTCCGAGCCCAC20.141643059490085No Hit
ATTGCGCAATGCTGTACACGGGGTGTCGTGAGATGTTGGGTTAATTCCCG20.141643059490085No Hit
GGGGTGTGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20.141643059490085No Hit
ATTGCGCAATCTGTCTCTTATACACCTGTATCTTATACACATCTCCGAGC20.141643059490085No Hit
ATTGCGCAATCTGTCACTTATACCTGTCTCTTATACACATCTCCGAGCCC20.141643059490085No Hit
ATTGCGCAATGCGCTCACCGGGCCGGGGTGCGGACAGTGTCTGGTGGGTA20.141643059490085No Hit
ATTGCGCAATCTGTCTCTTATACACCTGTCTCTTATACACATCTCCCAGC20.141643059490085No Hit
ATTGCGCAATCTGTCTCTTATACACCTGTCTATTATACACATCTCCGAGC20.141643059490085No Hit
GGCTGTGGGGTGGGGGGGTCTCGGGGGGGGGGGGGGGGGGGGGGGGGGGG20.141643059490085No Hit
GGGGGGTGGCGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20.141643059490085No Hit
ATTGCGCAATCTGTCTCCTGTCTCTTATACACATCTCCGAGCCCACGAGA20.141643059490085No Hit
GGGGGAGGGCAGGGGGGGGAAAGGGGGGGGGGGGGGGGGGGGGGGGGGGG20.141643059490085No Hit
GCGTGCGGGCTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20.141643059490085No Hit
ATTGCGCAATCTGTCTCTTATACACCTGTCTCTTATACAAATCTCCGAGC20.141643059490085No Hit
ATTGCGCAATGCCTTTCCCGGGTTCAACATTGCGCAATCTGTCTCTTATA20.141643059490085No Hit
CGTCTGTTGTGTATAAGAGACAGATTGCGCAAAAAAAAAAAAAAAAAAAA20.141643059490085No Hit
ATTGCGCAATTCGCTCACCGGGCCGGGTTGCGGACAGTGTCTGGTGGGTA20.141643059490085No Hit
ATTGCGCAATCTGTCTCTTATACCTGGCTCTTATACACATCTCCGAGCCC20.141643059490085No Hit
GGGCGGTGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20.141643059490085No Hit
GGGGGATGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20.141643059490085No Hit
ATTGCGCAATCTGTCTCTTATACCTGTCTCTTATACACATCTCCTAGCCC20.141643059490085No Hit
GGGGGCGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20.141643059490085No Hit
ATTGCGCAATCTGTCTCTTATACACCTGTCTCTTATACACATCACCGAGC20.141643059490085No Hit
ATTGCGCAATCTGTCTCTTATACACGTGTCTCTTATACACATCTCCGAGC20.141643059490085No Hit
CGTCTGTTGTGTATAAGAGACAGATTGCACAAAAAAAAAAAAAAAAAAAA20.141643059490085No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)