FastQCFastQC Report
Wed 8 May 2024
EGAF00007822350

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007822350
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences348506
Total Bases52.6 Mbp
Sequences flagged as poor quality0
Sequence length151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAGTAGGAGAGAGGGAGGTAAGAGTCAGAAGCTTATGTTGTTTATGCGG6220.1784761237970078No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6160.17675448916230999No Hit
GAGTAGGAGAGAGGGAGGTAAGAGTCAGAAGCTTATGTTGTTTATGCGGG4290.12309687638089445No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)