FastQCFastQC Report
Tue 7 May 2024
EGAF00007822361

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007822361
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2172
Total Bases327.9 kbp
Sequences flagged as poor quality0
Sequence length151
%GC63

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGCGCAATCTGTCTCTTATACACCTGTCTCTTATACACATCTCCGAGC984.511970534069982No Hit
ATTGCGCAATCTGTCTCTTATACCTGTCTCTTATACACATCTCCGAGCCC421.9337016574585635No Hit
ATTGCGCAATGCCTCCTCCGGGCTGGTTGATCCTGCCAGTAGCATATGCT140.6445672191528545No Hit
ATTGCGCAATGGATACAAGGGGGAACTCACTCCCCCATGATGCGCCATGG120.5524861878453038No Hit
ATTGCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA120.5524861878453038No Hit
ATTGCGCAATGTTCAATATGGGACATAAAAGTCAGGCACAATCGCTGGCG80.3683241252302026No Hit
GGGGTGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG70.32228360957642727No Hit
ATTGCGCAATGGTGTAGCCGGGGAGCTTCATAGTCGAAAGGGAAAGAGCC40.1841620626151013No Hit
ATTGCGCAATGTATGCCTGTCTCTTATACACATCTCCGAGCCCACGAGAC40.1841620626151013No Hit
ATCTGTCTCTTATACACATCTCCGAGCCCACGAGACCTGCAAGTGCATCG40.1841620626151013No Hit
ATTGCGCAATCTGTCTCTTATACACATCCTGTCTCTTATACACATCTCCG40.1841620626151013No Hit
ATTGCGCAATGTATGCTCTGTCTCTTATACACATCTCCGAGCCCACGAGA30.13812154696132595No Hit
GGGGGCTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30.13812154696132595No Hit
GGGGGGTGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30.13812154696132595No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)