FastQCFastQC Report
Wed 8 May 2024
EGAF00007822568

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007822568
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences152870
Total Bases23 Mbp
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5140.3362334009288938No Hit
GAGTAGGAGAGAGGGAGGTAAGAGTCAGAAGCTTATGTTGTTTATGCGGG2540.1661542487080526No Hit
GTATTACTATGAAGAAGATTATTACAAATGCATGGGCTGTGACGATAACG1820.11905540655458888No Hit
GGAGTAGGAGAGAGGGAGGTAAGAGTCAGAAGCTTATGTTGTTTATGCGG1810.1184012559691241No Hit
GGACTAGGATGATGGCGGGCAGGATAGTTCAGACGGTTTCTATTTCCTGA1530.10008503957611042No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)