FastQCFastQC Report
Wed 8 May 2024
EGAF00007822652

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007822652
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences522462
Total Bases78.8 Mbp
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAGTAGGAGAGAGGGAGGTAAGAGTCAGAAGCTTATGTTGTTTATGCGG14730.2819343799166255No Hit
GAGTAGGAGAGAGGGAGGTAAGAGTCAGAAGCTTATGTTGTTTATGCGGG10340.19790913023339496No Hit
GTATTACTATGAAGAAGATTATTACAAATGCATGGGCTGTGACGATAACG7840.1500587602543343No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6950.13302402854178869No Hit
CTATAGCAGATGCGAGCAGGAGTAGGAGAGAGGGAGGTAAGAGTCAGAAG5790.11082145687150452No Hit
CCACTATAGCAGATGCGAGCAGGAGTAGGAGAGAGGGAGGTAAGAGTCAG5750.11005585095183955No Hit
GCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5300.10144278435560863No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)