FastQCFastQC Report
Wed 8 May 2024
EGAF00007822655

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007822655
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences209996
Total Bases31.7 Mbp
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCTGTCTCTTATACACATCTCCGAGCCCACGAGACCCGCCATACTATCG6770.32238709308748736No Hit
ATCTGTCTCTTATACACATCTCCGAGCCCACGAGACCCGCCATACTATCT6260.2981009162079278No Hit
ATTGCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3940.18762262138326444No Hit
ATTGCGCAATCTGTCTCTTATACACCTGTCTCTTATACACATCTCCGAGC3060.14571706127735767No Hit
ATTGCGCAATGTCCGTCAGGGGATTTACAAGTTTGCAGGAACCAAAGTCT2940.14000266671746128No Hit
ATTGCGCAATGGAGCACCAGGGAGATCCAAGTGTACGCAGTAAATCCTTC2470.11762128802453381No Hit
ATTGCGCAATGGGCTGGGAGGGGCAGGCAGGAGGAGAGCACAGCCATCTG2380.11333549210461151No Hit
ATTGCGCAATGACGGTGGAGGGAGTTCAGGTGTTAACTCACTTGGATTAG2240.10666869845139908No Hit
ATTGCGCAATCTGTCTCTTATACCTGTCTCTTATACACATCTCCGAGCCC2210.10524009981142499No Hit
ATTGCGCAATGTCCACACCGGGTGGGCATGTTCCTAGTGACGCAGACAGA2150.10238290253147678No Hit
ATTGCGCAATGACGGATGGGGGGGGGCTGGGAAGTAAGCGAGTGGAGGCG2110.10047810434484467No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)