FastQCFastQC Report
Wed 8 May 2024
EGAF00007822702

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007822702
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences289096
Total Bases43.6 Mbp
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATGGACACTCCGTGTA4060.1404377784542159No Hit
GGAGTAGGAGAGAGGGAGGTAAGAGTCAGAAGCTTATGTTGTTTATGCGG3470.12002933281678059No Hit
GAGTAGGAGAGAGGGAGGTAAGAGTCAGAAGCTTATGTTGTTTATGCGGG2910.10065860475413013No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)