FastQCFastQC Report
Wed 8 May 2024
EGAF00007822720

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007822720
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences295104
Total Bases44.5 Mbp
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGTAGGAGAGAGGGAGGTAAGAGTCAGAAGCTTATGTTGTTTATGCGGG5940.20128497072218607No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATGGACACTCCGTGTA5750.19484656256777272No Hit
GGAGTAGGAGAGAGGGAGGTAAGAGTCAGAAGCTTATGTTGTTTATGCGG5330.18061429191064846No Hit
GTATTACTATGAAGAAGATTATTACAAATGCATGGGCTGTGACGATAACG4530.15350520494469747No Hit
GGACTAGGATGATGGCGGGCAGGATAGTTCAGACGGTTTCTATTTCCTGA3470.1175856647148124No Hit
GTATGTAGGAGTTGAAGATTAGTCCGCCGTAGTCGGTGTACTCGTAGGTT3340.11318043808284538No Hit
CTATAGCAGATGCGAGCAGGAGTAGGAGAGAGGGAGGTAAGAGTCAGAAG3300.11182498373454783No Hit
CCACTATAGCAGATGCGAGCAGGAGTAGGAGAGAGGGAGGTAAGAGTCAG3270.11080839297332465No Hit
GGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCTGTGACGATAA3200.10843634786380395No Hit
GTACCATTGGTGGCCAATTGATTTGATGGTAAGGGAGGGATCGTTGACCT3190.10809748427672956No Hit

[OK]Adapter Content

Adapter graph