FastQCFastQC Report
Wed 18 Jan 2023
EGAF00007822766

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007822766
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12173
Sequences flagged as poor quality0
Sequence length151
%GC55

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTATAAGAGACAGATTGCGCAATCTGTCTCTTATACACATCTGACGCT4763.9102932719953998No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATGTCAAGAGGGTGTA3292.7027027027027026No Hit
GTATAAGAGACAGATTGCGCAATCTGTCTCTTATACACATCTGACGCTGC2912.3905364330896246No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATGTCAAGAGGGTGGT2782.283742709274624No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATGTCAAGAGGGTGTT2552.0947999671403927No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATGTCAAGAGGGTGGA1631.3390289986034667No Hit
CAATCTGTCTCTTATACACATCTGACGCTGCCGACGATGTCAAGAGGGTG700.5750431282346177No Hit
GCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGATGTCAAGAGG660.5421835209069251No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT660.5421835209069251No Hit
TTTTTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGATGTCA560.46003450258769407No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG500.4107450915961554No Hit
GCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT450.3696705824365399No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGC420.3450258769407705No Hit
GATGTGTATAAGAGACAGATTGCGCAATCTGTCTCTTATACACATCTGAC410.33681097510884744No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCG320.2628768586215395No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGG310.25466195678961634No Hit
ACATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGATGTCA310.25466195678961634No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCA310.25466195678961634No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGC300.24644705495769326No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATGTCAAGAGGGTGTG280.23001725129384704No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATGTCAAGAGGGTGGG280.23001725129384704No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGCA260.21358744763000084No Hit
GCATACATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGAT260.21358744763000084No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCAA250.2053725457980777No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG250.2053725457980777No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGC240.1971576439661546No Hit
CAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCAAA190.15608313480653907No Hit
CAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCAA180.14786823297461593No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGC170.13965333114269285No Hit
TTTTTTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGATGTC170.13965333114269285No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGA160.13143842931076974No Hit
CAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCAAT160.13143842931076974No Hit
GATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGATGTCAA150.12322352747884663No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCA150.12322352747884663No Hit
GTATCAGCCTGTTATCCCCAGAGTACCTTTTATCCGTTGAGCGATGGCCC150.12322352747884663No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATGTCAAGAGGGGGGA150.12322352747884663No Hit
CAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGCAAA150.12322352747884663No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGA140.11500862564692352No Hit
CAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGCAA140.11500862564692352No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGC140.11500862564692352No Hit
CATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGATGTCAA130.10679372381500042No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCAA130.10679372381500042No Hit
CAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGCAAT130.10679372381500042No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)