FastQCFastQC Report
Wed 8 May 2024
EGAF00007822816

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007822816
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences83754
Total Bases12.6 Mbp
Sequences flagged as poor quality0
Sequence length151
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAGTAGGAGAGAGGGAGGTAAGAGTCAGAAGCTTATGTTGTTTATGCGG7370.8799579721565537No Hit
GTGTATAAGAGACAGATTGCGCAATCTGTCTCTTATACACATCTGACGCT3250.38804116818301215No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATTGTTGGAGGGTGTA3020.36057979320390665No Hit
GTATAAGAGACAGATTGCGCAATCTGTCTCTTATACACATCTGACGCTGC2300.27461374979105474No Hit
GAGTAGGAGAGAGGGAGGTAAGAGTCAGAAGCTTATGTTGTTTATGCGGG1750.20894524440623732No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATTGTTGGAGGGTGGT1730.20655729875588033No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATTGTTGGAGGGTGTT1550.18506578790266734No Hit
GAATTCATCCAATCCAAATGCGGCATCTTCAAACCTCCATGATGCTGCTT1480.17670797812641786No Hit
GTGGAAGCAGCTCGCGTGTAGAACCAGTTCTCATCGTAGGGAGCAAGCTC1450.17312605965088235No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATTGTTGGAGGGTGGA1340.15999235857391886No Hit
CTAGTCAGTTGCCAAAGCCTCCGATTATGATGGGTATTACTATGAAGAAG1230.14685865749695537No Hit
GCCCCATGTGACACCAGGGGCTCCTTGGCATCCAGGCTTGGCGTCTAGTC1170.1396948205458844No Hit
GCTGCTTCTTGGTCTTCAGGTTCTCCTCGTGCTTGTTGAGCCGGCGGCGC1140.13611290207034887No Hit
GGACTAGGATGATGGCGGGCAGGATAGTTCAGACGGTTTCTATTTCCTGA1100.1313370107696349No Hit
GTATGTAGGAGTTGAAGATTAGTCCGCCGTAGTCGGTGTACTCGTAGGTT1080.1289490651192779No Hit
GCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGATTGTTGGAGG1030.12297920099338538No Hit
GCCTCATCTTTCTTCTTTTGCGCTTCAGCCTGCGCATTCGCTTCTTCCTC1020.12178522816820689No Hit
GTATTACTATGAAGAAGATTATTACAAATGCATGGGCTGTGACGATAACG1020.12178522816820689No Hit
GTACCATTGGTGGCCAATTGATTTGATGGTAAGGGAGGGATCGTTGACCT880.10506960861570791No Hit
GCACCGCCTTCTTGCGCTTCTTCACCTCCTCTGGCGTTGAAGACTTACGC870.1038756357905294No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)