FastQCFastQC Report
Wed 8 May 2024
EGAF00007822846

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007822846
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences352752
Total Bases53.2 Mbp
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAGTAGGAGAGAGGGAGGTAAGAGTCAGAAGCTTATGTTGTTTATGCGG5510.15620039007574726No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGACTCTCTTCTAGTGTA5170.1465618905066449No Hit
GTGTATAAGAGACAGATTGCGCAATCTGTCTCTTATACACATCTGACGCT5060.14344355241075882No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)