FastQCFastQC Report
Wed 8 May 2024
EGAF00007822880

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007822880
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences341906
Total Bases51.6 Mbp
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGTAGGAGAGAGGGAGGTAAGAGTCAGAAGCTTATGTTGTTTATGCGGG5990.17519435166390762No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5620.16437266383157945No Hit
GGAGTAGGAGAGAGGGAGGTAAGAGTCAGAAGCTTATGTTGTTTATGCGG5140.15033371745450505No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATAGTACGGAGGTGTA4920.1438992003650126No Hit
GTATTACTATGAAGAAGATTATTACAAATGCATGGGCTGTGACGATAACG4700.1374646832755202No Hit
GGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCTGTGACGATAA3440.10061244903569987No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)