FastQCFastQC Report
Wed 8 May 2024
EGAF00007822906

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007822906
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences305899
Total Bases46.1 Mbp
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGTAGGAGAGAGGGAGGTAAGAGTCAGAAGCTTATGTTGTTTATGCGGG4960.16214502172285625No Hit
GGAGTAGGAGAGAGGGAGGTAAGAGTCAGAAGCTTATGTTGTTTATGCGG3990.13043520900689445No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATAGTACGGAGGTGTA3970.1297813984354313No Hit
GTATTACTATGAAGAAGATTATTACAAATGCATGGGCTGTGACGATAACG3830.1252047244351894No Hit
GTATGTAGGAGTTGAAGATTAGTCCGCCGTAGTCGGTGTACTCGTAGGTT3210.10493659671983237No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)