FastQCFastQC Report
Wed 8 May 2024
EGAF00007822916

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007822916
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences260363
Total Bases39.3 Mbp
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAGTAGGAGAGAGGGAGGTAAGAGTCAGAAGCTTATGTTGTTTATGCGG5360.2058664249528543No Hit
GAGTAGGAGAGAGGGAGGTAAGAGTCAGAAGCTTATGTTGTTTATGCGGG4340.16669035154764694No Hit
GTATTACTATGAAGAAGATTATTACAAATGCATGGGCTGTGACGATAACG3360.12905059474656536No Hit
GTGTATAAGAGACAGATTGCGCAATCTGTCTCTTATACACATCTGACGCT2780.1067740039867416No Hit
GGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCTGTGACGATAA2670.10254913332539568No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)