FastQCFastQC Report
Tue 7 May 2024
EGAF00007822957

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007822957
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4246
Total Bases641.1 kbp
Sequences flagged as poor quality0
Sequence length151
%GC61

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGCGCAATCTGTCTCTTATACACCTGTCTCTTATACACATCTCCGAGC2796.570890249646727No Hit
ATTGCGCAATCTGTCTCTTATACCTGTCTCTTATACACATCTCCGAGCCC1152.708431464908149No Hit
ATTGCGCAATCTGTCTCTTATACACATCCTGTCTCTTATACACATCTCCG270.6358926048045219No Hit
ATCTGTGTCTTATACACATCTCCGAGCCCACGAGACTTCACCAGCTATCG180.4239284032030146No Hit
ATTGCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA140.3297220913801225No Hit
ATTGCGCAATGAGAGTGCTGGGGGCGTGCACTTGGATCGGCGCGCCTCCG130.30617051342439944No Hit
ATCTGTCTCTTATACACATCTCCGAGCCCACGAGACTTCACCAGCTATCG110.2590673575129534No Hit
ATTGCGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACTTCACCAGC100.23551577955723035No Hit
ATCTGTCTCTTATACACATCTCCGAGCCCACGAGACTTCACCAGCTATCT100.23551577955723035No Hit
GGGGGCTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG90.2119642016015073No Hit
ATTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACTTCACCAGCTAT80.18841262364578426No Hit
ATTGCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCGTATGCTGCTG80.18841262364578426No Hit
ATTGCGCAAAAACTGTCTCTTATACACATCTCCGAGCCCACGAGACTTCA70.16486104569006124No Hit
ATCTGTGGCTTATACACATCTCCGAGCCCACGAGACTTCACCAGCTATCG60.1413094677343382No Hit
ATCTGTGTCTTATACACATCTCCGAGCCCACGAGACTTCACCAGCTAGCG60.1413094677343382No Hit
ATTGCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAGTATGCTGCTG50.11775788977861518No Hit
ATTGCGCAATGTATGCCTGTCTCTTATACACATCTCCGAGCCCACGAGAC50.11775788977861518No Hit
ATTGCGCAAAAAACTGTCTCTTATACACATCTCCGAGCCCACGAGACTTC50.11775788977861518No Hit
ATTGCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCGTATGCCTGTG50.11775788977861518No Hit
ATTGCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCGTATGCCTGTC50.11775788977861518No Hit
GGGGTGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50.11775788977861518No Hit
ATTGCGCAATGCTGTAACGGGTGGAGCCCGAACCGTCATGGCTGCGCCCA50.11775788977861518No Hit
ATCTGTGTCTTATACACATCTCCGAGCCCACGAGACTTCACCAGCGATCG50.11775788977861518No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)