FastQCFastQC Report
Tue 7 May 2024
EGAF00007823077

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007823077
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9134
Total Bases1.3 Mbp
Sequences flagged as poor quality0
Sequence length151
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGCGCAATCTGTCTCTTATACACCTGTCTCTTATACACATCTCCGAGC2512.747974600394132No Hit
ATTGCGCAATCTGTCTCTTATACCTGTCTCTTATACACATCTCCGAGCCC1551.6969564265382087No Hit
ATTGCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA790.8649003722356033No Hit
ATTGCGCAATGGGTGTCATGGGATGACAAACATACGAAAAACACATCCAT750.8211079483249398No Hit
ATCTGTGTCTTATACACATCTCCGAGCCCACGAGACGATGGACGCTATCG560.6130939347492883No Hit
ATTGCGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGATGGACGC450.4926647689949638No Hit
ATCTGTCTCTTATACACATCTCCGAGCCCACGAGACGATGGACGCTATCG320.35033939128530767No Hit
ATTGCGCAATCTGTCTCTTATACACATCCTGTCTCTTATACACATCTCCG320.35033939128530767No Hit
ATTGCGCAATGGTGGCGTGGGGGGGGATAGAATGGAAAATGTTAAAGAAG300.3284431793299759No Hit
ATTGCGCAATGTCAAACCCGGGGTGCTAATACCGGATAATGTCGAGAAGC290.31749507335231003No Hit
ATTGCGCAATGTATGCCTGTCTCTTATACACATCTCCGAGCCCACGAGAC280.30654696737464415No Hit
ATTGCGCAATGCAAGGGGCGGGATGGGACACCCAACACTTTTTCCATTTC270.29559886139697833No Hit
ATTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACGATGGACGCTAT220.240858331508649No Hit
ATCTGTGGCTTATACACATCTCCGAGCCCACGAGACGATGGACGCTATCG170.18611780162031968No Hit
ATTGCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCGTATGCTGCTG170.18611780162031968No Hit
ATCTGTCTCTTATACACATCTCCGAGCCCACGAGACGATGGACGCTATCT160.17516969564265383No Hit
ATTGCGCAAAAACTGTCTCTTATACACATCTCCGAGCCCACGAGACGATG160.17516969564265383No Hit
ATTGCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCGTATGCTGCT150.16422158966498795No Hit
ATTGCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCGTATGCCTGTC150.16422158966498795No Hit
ATTGCGCAATGCATGGAGCGGGATGGGACACCCAACACTTTTTCCATTTC140.15327348368732208No Hit
ATCTGTGTCTTATACACATCTCCGAGCCCACGAGACGATGGACGCTAGCG130.14232537770965623No Hit
ATTGCGCAATGTATGCTGCCTGTCTCTTATACACATCTCCGAGCCCACGA130.14232537770965623No Hit
ATTGCGCAATGTATGCTCTGTCTCTTATACACATCTCCGAGCCCACGAGA120.13137727173199037No Hit
ATCTGTGTCTTATACACATCTCCGAGCCCACGAGACGATGGACGCGATCG120.13137727173199037No Hit
ATTGCGCAATGCAGGTTCCGGGACGAAAAGAACAGAGTAACAAAAACCAC110.1204291657543245No Hit
ATTGCGCAAAAAACTGTCTCTTATACACATCTCCGAGCCCACGAGACGAT110.1204291657543245No Hit
ATCTGTGTCTTATACACATCTCCGAGCCCACGAGACGATGGACGCTATCT100.10948105977665863No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)