FastQCFastQC Report
Tue 7 May 2024
EGAF00007823101

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007823101
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3608
Total Bases544.8 kbp
Sequences flagged as poor quality0
Sequence length151
%GC62

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGCGCAATCTGTCTCTTATACACCTGTCTCTTATACACATCTCCGAGC1484.1019955654102No Hit
ATTGCGCAATCTGTCTCTTATACCTGTCTCTTATACACATCTCCGAGCCC631.746119733924612No Hit
ATTGCGCAATGATACTCTCGGGGGGGGGTGGACGAGGGGGTTCAGACAAG250.6929046563192905No Hit
ATTGCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA210.582039911308204No Hit
ATTGCGCAATCTGTCTCTTATACACATCCTGTCTCTTATACACATCTCCG110.3048780487804878No Hit
ATTGCGCAATGTATGCCTGTCTCTTATACACATCTCCGAGCCCACGAGAC100.2771618625277162No Hit
ATCTGTGTCTTATACACATCTCCGAGCCCACGAGACTCCGGATTCGATCG90.24944567627494454No Hit
ATTGCGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACTCCGGATTC80.22172949002217296No Hit
ATTGCGCAATGCGTATTTTGGGATGGCTGTCGTCAGCTCGTGTCGTGAGA70.19401330376940135No Hit
ATTGCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCGTATGCTGCTG70.19401330376940135No Hit
ATCTGTCTCTTATACACATCTCCGAGCCCACGAGACTCCGGATTCGATCG60.1662971175166297No Hit
ATTGCGCAAAAACTGTCTCTTATACACATCTCCGAGCCCACGAGACTCCG60.1662971175166297No Hit
ATTGCGCAATGTCTGTCTCTTATACACATCTCCGAGCCCACGAGACTCCG60.1662971175166297No Hit
ATTGCGCAATGTATGCTGCCTGTCTCTTATACACATCTCCGAGCCCACGA60.1662971175166297No Hit
GGGGGCTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50.1385809312638581No Hit
ATTGCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCGTATGCTGCT40.11086474501108648No Hit
CGTCTGTTGTGTATAAGAGACAGATTGCGCAAAAAAAAAAAAAAAAAAAA40.11086474501108648No Hit
GGGGTGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40.11086474501108648No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)