FastQCFastQC Report
Tue 7 May 2024
EGAF00007823156

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007823156
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4249
Total Bases641.5 kbp
Sequences flagged as poor quality0
Sequence length151
%GC62

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTATAAGAGACAGATTGCGCAATCTGTCTCTTATACACATCTGACGCT74417.51000235349494No Hit
GTATAAGAGACAGATTGCGCAATCTGTCTCTTATACACATCTGACGCTGC3197.507648858554954No Hit
GATGTGTATAAGAGACAGATTGCGCAATCTGTCTCTTATACACATCTGAC701.6474464579901154No Hit
GCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT190.447164038597317No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATGACGGTGAGGTGGT190.447164038597317No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATGACGGTGAGGTGTA180.42362908919745823No Hit
GTGTCCTTTATACCTTAGTCGTTTTTTTCTCTTATTTTATACACTTTAAT150.3530242409978819No Hit
CTTATACACATCTGACGCTGCCGACGATGACGGTGAGGTGTAGATCTCGG110.2588844433984467No Hit
GGCTCCCACTGTTTGTAGGCAATCGGTTTCAGGTACTATTTCACTCCCCT90.21181454459872912No Hit
CTTTAGGCATGTGTCCTTTATACCTTAGTCGTTTTTTTCTCTTATTTTAT90.21181454459872912No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATGACGGTGAGGTGTT90.21181454459872912No Hit
CTTATACACATCTGACGCTGCCGACGATGACGGTGAGGTGGTGGTGTGGG90.21181454459872912No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT80.18827959519887033No Hit
GCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT80.18827959519887033No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATGACGGTGAGGTGGA80.18827959519887033No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60.14120969639915276No Hit
GAGACAGATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGA60.14120969639915276No Hit
GTGTATAAGAGACAGATTGCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA60.14120969639915276No Hit
CTTATACACATCTGACGCTGCCGACGATGACGGTGAGGTGTTGTTGTGGG60.14120969639915276No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCG60.14120969639915276No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG60.14120969639915276No Hit
GCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGATGACGGTGAG60.14120969639915276No Hit
CTTATACACATCTGACGCTGCCGACGATGACGGTGAGGTGGTGTTGTGGG60.14120969639915276No Hit
GCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCAAAAT50.11767474699929395No Hit
CTTATACACATCTGACGCTGCCGACGATGACGGTGAGGTGGTGGTGGGGG50.11767474699929395No Hit
CATCTGACGCTGCCGACGATGACGGTGAGGTGGTGTTGTCGGGGGGGGGG50.11767474699929395No Hit
ACACTAAGTCGCTGACCCATTATACAAAGGTACGTGGTCACCATTGCAGG50.11767474699929395No Hit
CTTATACACATCTGACGCTGCCGACGATGACGGTGAGGTGGTGTTGGGGG50.11767474699929395No Hit
CTCTTATACACATCTGACGCTGCCGACGATGACGGTGAGGTGGGGGTGTG50.11767474699929395No Hit
CCATTGCAGGCTCCCACTGTTTGTAGGCAATCGGTTTCAGGTACTATTTC50.11767474699929395No Hit
CAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCAA50.11767474699929395No Hit
CAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT50.11767474699929395No Hit
CTCTTATACACATCTGACGCTGCCGACGATGACGGTGAGGTGGTGTTGTC50.11767474699929395No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGC50.11767474699929395No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATGACGGTGAGGTGGG50.11767474699929395No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGC50.11767474699929395No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)