FastQCFastQC Report
Tue 7 May 2024
EGAF00007823179

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007823179
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3669
Total Bases554 kbp
Sequences flagged as poor quality0
Sequence length151
%GC61

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGCGCAATCTGTCTCTTATACACCTGTCTCTTATACACATCTCCGAGC1905.178522758244753No Hit
ATTGCGCAATCTGTCTCTTATACCTGTCTCTTATACACATCTCCGAGCCC952.5892613791223766No Hit
ATTGCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA200.5451076587626056No Hit
ATTGCGCAATCTGTCTCTTATACACATCCTGTCTCTTATACACATCTCCG190.5178522758244753No Hit
ATTGCGCAATGGCGGAGGCGGGAAGAAGGAGAAGAAGGAGAGAAGAAGAG160.43608612701008453No Hit
ATTGCGCAATGAGGGACCGGGGAGTAAGAGCACAAAGAAAGAATTAAACT140.38157536113382395No Hit
ATTGCGCAATGTCGCCTCAGGGAGAAGAGGAAAGAAGAAGAAAAAGAAGA110.2998092123194331No Hit
ATTGCGCAATCTGTCTCTTATACACCTGGCTCTTATACACATCTCCGAGC80.21804306350504227No Hit
GGGGTGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG80.21804306350504227No Hit
ATTGCGCAAAAACTGTCTCTTATACACATCTCCGAGCCCACGAGACGATG70.19078768056691198No Hit
ATTGCGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGATGGACGC60.1635322976287817No Hit
CGTCTGTTGTGTATAAGAGACAGATTGCGCAAAAAAAAAAAAAAAAAAAA60.1635322976287817No Hit
ATTGCGCAATGTATGCCTGTCTCTTATACACATCTCCGAGCCCACGAGAC60.1635322976287817No Hit
ATTGCGTATGGATCCAACGGGCGCTTGAGAGAAGTCTCCTGAAGGAACTC50.1362769146906514No Hit
ATCTGTCTCTTATACACATCTCCGAGCCCACGAGACGATGGACGCTATCG50.1362769146906514No Hit
ATTGCGCAATCTGGCTCTTATACACCTGTCTCTTATACACATCTCCGAGC40.10902153175252113No Hit
GGGGGCTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40.10902153175252113No Hit
ATCTGTCTCTTATACACATCTCCGAGCCCACGAGACGATGGACGCTATCT40.10902153175252113No Hit
ATTGCGCAATGTATGCTCTGTCTCTTATACACATCTCCGAGCCCACGAGA40.10902153175252113No Hit
ATTGCGCAATCTGTCTCTTATACACCTGTCGCTTATACACATCTCCGAGC40.10902153175252113No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)