FastQCFastQC Report
Tue 7 May 2024
EGAF00007823220

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007823220
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5642
Total Bases851.9 kbp
Sequences flagged as poor quality0
Sequence length151
%GC56

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTATAAGAGACAGATTGCGCAATCTGTCTCTTATACACATCTGACGCT4738.38355193193903No Hit
GTATAAGAGACAGATTGCGCAATCTGTCTCTTATACACATCTGACGCTGC2524.466501240694789No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATGACGGTGAGGTGGT841.488833746898263No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATGACGGTGAGGTGTA520.9216589861751152No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATGACGGTGAGGTGTT500.8862105636299186No Hit
GATGTGTATAAGAGACAGATTGCGCAATCTGTCTCTTATACACATCTGAC440.7798652959943283No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATGACGGTGAGGTGGA320.5671747607231479No Hit
GCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT280.49627791563275436No Hit
GCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGATGACGGTGAG260.4608294930875576No Hit
CAATCTGTCTCTTATACACATCTGACGCTGCCGACGATGACGGTGAGGTG240.42538107054236085No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT240.42538107054236085No Hit
TTTTTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGATGACG200.3544842254519674No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGC180.31903580290677064No Hit
ATTATATATAGAATGCGTAGAGAGGGGAGGGCAATTATGATAAGGATTAC180.31903580290677064No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATGACGGTGAGGTGGG160.28358738036157394No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGG150.26586316908897556No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATGACGGTGAGGTGTG150.26586316908897556No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG140.24813895781637718No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG140.24813895781637718No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCA140.24813895781637718No Hit
TTTTTTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGATGAC120.21269053527118043No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGC120.21269053527118043No Hit
CAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCAAT110.19496632399858208No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCG100.1772421127259837No Hit
GATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGATGACGG100.1772421127259837No Hit
GCATACATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGACGAT100.1772421127259837No Hit
GTTATAACGTTTGTATGCGTAGAAGATATACTCAGGATCAGCTGCAGGGT90.15951790145338532No Hit
GCAGCATACATTGCGCAATCTGTCTCTTATACACATCTGACGCTGCCGAC90.15951790145338532No Hit
CAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGCAA80.14179369018078697No Hit
CATCTGACGCTGCCGACGATGACGGTGAGGTGGTGGTGTGGGGGGGGGGG80.14179369018078697No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCAA80.14179369018078697No Hit
GTATACTCGTAGCTTCAGTATCATTGGTGCCCTATGGTTTTGACGGTTAA80.14179369018078697No Hit
GCCATTACCTCACCAACAAGCTGATAGGCCGCGAGTCCATCCAAAACCGA80.14179369018078697No Hit
CAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCAAA70.12406947890818859No Hit
CCATTGTACGGCCAATGATGGAATGCTCTCCTGAGAGTGAGATCACACGA70.12406947890818859No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGCA70.12406947890818859No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGCAA70.12406947890818859No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGC70.12406947890818859No Hit
GCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCAATATT60.10634526763559021No Hit
CAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCAA60.10634526763559021No Hit
GTTATAAAGTGTCTTAAAGTTTTCTACTGAAGTAAGACCACAGTGCTTAT60.10634526763559021No Hit
CAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCAA60.10634526763559021No Hit
GGTCTTCATAGTCAGTATACTCGTAGCTTCAGTATCATTGGTGCCCTATG60.10634526763559021No Hit
CTATTGTGCTTGTATGTGTTAGTTTTGTTGTTAATATTAGCGAGATAATA60.10634526763559021No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGC60.10634526763559021No Hit
GCGTAGAGAGGGGAGGGCAATTATGATAAGGATTACAGCTGGTAGAATAG60.10634526763559021No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)