FastQCFastQC Report
Tue 7 May 2024
EGAF00007823247

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007823247
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6282
Total Bases948.5 kbp
Sequences flagged as poor quality0
Sequence length151
%GC64

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGCGCAATCTGTCTCTTATACACCTGTCTCTTATACACATCTCCGAGC5458.675581025151226No Hit
ATTGCGCAATCTGTCTCTTATACCTGTCTCTTATACACATCTCCGAGCCC2554.059216809933142No Hit
ATTGCGCAATCTGTCTCTTATACACATCCTGTCTCTTATACACATCTCCG360.5730659025787965No Hit
ATTGCGCAATGCGAAGTGTGGGGGTTCCAGGAAATAGCCCCTCCATTATA250.3979624323463865No Hit
ATTGCGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACCGCGCTTAG230.36612543775867556No Hit
ATCTGTGTCTTATACACATCTCCGAGCCCACGAGACCGCGCTTAGAATCG150.2387774594078319No Hit
ATTGCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA150.2387774594078319No Hit
ATTGCGCAATCTGTCTCTTATACACCTGGCTCTTATACACATCTCCGAGC140.22285896211397643No Hit
ATTGCGCAAAAACTGTCTCTTATACACATCTCCGAGCCCACGAGACCGCG140.22285896211397643No Hit
GGGGTGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG110.17510347023241007No Hit
ATTGCGCAATCTGTCTCTTATACACCTGTCGCTTATACACATCTCCGAGC110.17510347023241007No Hit
ATTGCGCAATATGTCTCTTATACACCTGTCTCTTATACACATCTCCGAGC100.1591849729385546No Hit
ATCTGTCTCTTATACACATCTCCGAGCCCACGAGACCGCGCTTAGAATCG90.14326647564469913No Hit
ATTGCGCAATCCTGTCTCTTATACACATCTCCGAGCCCACGAGACCGCGC90.14326647564469913No Hit
GGGGGGTGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG90.14326647564469913No Hit
ATTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCGCGCTTAGAAT80.1273479783508437No Hit
ATTGCGCAATCTGTCTCTTATACACCTGTCTCTGATACACATCTCCGAGC80.1273479783508437No Hit
ATTGCGCAAAAAACTGTCTCTTATACACATCTCCGAGCCCACGAGACCGC80.1273479783508437No Hit
ATTGCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCGTATGCCTGTG80.1273479783508437No Hit
ATTGCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCGTATGCTGC70.11142948105698822No Hit
GGGGGCTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG70.11142948105698822No Hit
ATTGCGCAATGTATGCCTGTCTCTTATACACATCTCCGAGCCCACGAGAC70.11142948105698822No Hit
ATTGCGCAATCTGTCTCTTATACACCTGTCTCATATACACATCTCCGAGC70.11142948105698822No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)