FastQCFastQC Report
Tue 7 May 2024
EGAF00007823313

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007823313
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3280
Total Bases495.2 kbp
Sequences flagged as poor quality0
Sequence length151
%GC63

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGCGCAATCTGTCTCTTATACACCTGTCTCTTATACACATCTCCGAGC1203.6585365853658534No Hit
ATTGCGCAATCTGTCTCTTATACCTGTCTCTTATACACATCTCCGAGCCC621.8902439024390243No Hit
ATTGCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA160.4878048780487805No Hit
ATTGCGCAATCTGTCTCTTATACACATCCTGTCTCTTATACACATCTCCG140.426829268292683No Hit
ATTGCGCAATGCTCTTGGAGGGGTCGGCAACATGGTTGTACGAGCAGGTG110.3353658536585366No Hit
ATTGCGCAATGTTCTACTGGGGCGGGGCTGGGTGAGTCGACCCCTAAGGC90.274390243902439No Hit
ATTGCGCAATGCAACACGCGGGCCAGTCAAGAAGAAAAGGGCTTAAGGTG80.24390243902439024No Hit
ATTGCGCAATGTACACCCGGGATAGCTGGTTCTCCGCGAAATCTATTGAG70.2134146341463415No Hit
GGGGGCTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG70.2134146341463415No Hit
GGGGTGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60.1829268292682927No Hit
GGGGGGTGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60.1829268292682927No Hit
ATTGCGCAAAAACTGTCTCTTATACACATCTCCGAGCCCACGAGACTTAT60.1829268292682927No Hit
ATTGCGCAATGTATGCCTGTCTCTTATACACATCTCCGAGCCCACGAGAC50.1524390243902439No Hit
GGGGTGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50.1524390243902439No Hit
ATTGCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAGTTTGGGGG50.1524390243902439No Hit
ATTGCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCGTATGCTGCTG50.1524390243902439No Hit
ATTGCGCAATGATCTATCCGGGGGCCAATCAAACCGGGAAATAGCTGGTT50.1524390243902439No Hit
GGGCGCTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40.12195121951219512No Hit
ATTGCGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACTTATGGCCT40.12195121951219512No Hit
ATCTGTCTCTTATACACATCTCCGAGCCCACGAGACTTATGGCCTTATCG40.12195121951219512No Hit
GGGGGTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40.12195121951219512No Hit
ATTGCGCAATATGTCTCTTATACCTGTCTCTTATACACATCTCCGAGCCC40.12195121951219512No Hit
GGGGGCTGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40.12195121951219512No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)