FastQCFastQC Report
Tue 7 May 2024
EGAF00007823329

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007823329
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46873
Total Bases7 Mbp
Sequences flagged as poor quality0
Sequence length151
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGCGCAATCTGTCTCTTATACACCTGTCTCTTATACACATCTCCGAGC1220.260277771851599No Hit
ATTGCGCAATGTCGCGTTTGGGGGGTTCAGCTGTCTCTTACTTTTAACCA640.1365391590041175No Hit
ATTGCGCAATGCAGTGGATGGGCACAGCAAGACGAGAAGACCCTATGGAG640.1365391590041175No Hit
ATTGCGCAATGAACTCATAGGGGCGTTTTGCAGACGCCACCGCCGAGGAA610.1301388859257995No Hit
ATTGCGCAATGTTGGACTGGGGGCCGGCTCTCACTGCTAGGGGCTTAAGC530.11307149105028481No Hit
ATTGCGCAATGAGAGACCCGGGGGGTTCAGCTGTCTCTTACTTTTAACCA510.10880464233140613No Hit
ATTGCGCAATGCGGGCGAGGGGGTCCCAGTCAGTCCGGAGGCTGCGGCTG470.1002709448936488No Hit

[OK]Adapter Content

Adapter graph