FastQCFastQC Report
Tue 7 May 2024
EGAF00007823330

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007823330
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46873
Total Bases7 Mbp
Sequences flagged as poor quality0
Sequence length151
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAGTAGGAGAGAGGGAGGTAAGAGTCAGAAGCTTATGTTGTTTATGCGG4560.9728415079043373No Hit
GAGTAGGAGAGAGGGAGGTAAGAGTCAGAAGCTTATGTTGTTTATGCGGG2940.6272267616751648No Hit
CCACTATAGCAGATGCGAGCAGGAGTAGGAGAGAGGGAGGTAAGAGTCAG1640.34988159494805116No Hit
CTATAGCAGATGCGAGCAGGAGTAGGAGAGAGGGAGGTAAGAGTCAGAAG1620.34561474622917243No Hit
GTGTATAAGAGACAGATTGCGCAATCTGTCTCTTATACACATCTGACGCT1610.3434813218697331No Hit
GTATTACTATGAAGAAGATTATTACAAATGCATGGGCTGTGACGATAACG1370.29227913724318905No Hit
GTATGTAGGAGTTGAAGATTAGTCCGCCGTAGTCGGTGTACTCGTAGGTT1320.28161201544599235No Hit
AGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTATAGCAGATG1140.24321037697608433No Hit
GTACCATTGGTGGCCAATTGATTTGATGGTAAGGGAGGGATCGTTGACCT1100.234676679538327No Hit
GGACTAGGATGATGGCGGGCAGGATAGTTCAGACGGTTTCTATTTCCTGA1090.23254325517888763No Hit
GTTCAGTACCATTGGTGGCCAATTGATTTGATGGTAAGGGAGGGATCGTT990.21120901158449426No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT900.19200819234954025No Hit
GTGTACTCGTAGGTTCAGTACCATTGGTGGCCAATTGATTTGATGGTAAG880.18774134363066158No Hit
GGTCTACGGAGGCTCCAGGGTGGGAGTAGTTCCCTGCTAAGGGAGGGTAG870.18560791927122222No Hit
GTTCCTGCTCCGGCCTCCACTATAGCAGATGCGAGCAGGAGTAGGAGAGA860.1834744949117829No Hit
GGTGTAAGGAGAAGATGGTTAGGTCTACGGAGGCTCCAGGGTGGGAGTAG860.1834744949117829No Hit
GGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCTGTGACGATAA830.1770742218334649No Hit
GGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTATAGCAGATGC820.17494079747402558No Hit
GTTATGTAAAGGATGCGTAGGGATGGGAGGGCGATGAGGACTAGGATGAT810.17280737311458622No Hit
CTCGTAGGTTCAGTACCATTGGTGGCCAATTGATTTGATGGTAAGGGAGG800.17067394875514688No Hit
GTTCAACCTGTTCCTGCTCCGGCCTCCACTATAGCAGATGCGAGCAGGAG750.1600068269579502No Hit
GTATTGGGTTATGGCAGGGGGTTTTATATTGATAATTGTTGTGATGAAAT720.15360655387963218No Hit
ATGTAAAGGATGCGTAGGGATGGGAGGGCGATGAGGACTAGGATGATGGC690.1472062808013142No Hit
GTAGGAGAGAGGGAGGTAAGAGTCAGAAGCTTATGTTGTTTATGCGGGGA680.14507285644187487No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG680.14507285644187487No Hit
GGAGAGAGGGAGGTAAGAGTCAGAAGCTTATGTTGTTTATGCGGGGAAAC670.1429394320824355No Hit
TTGTAGATGTGGTCGTTACCTAGAAGGTTGCCTGGCTGGCCCAGCTCGGC670.1429394320824355No Hit
GAGTAGTTCCCTGCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCC650.13867258336355684No Hit
GTATAAGAGACAGATTGCGCAATCTGTCTCTTATACACATCTGACGCTGC640.1365391590041175No Hit
GGATAGTTCAGACGGTTTCTATTTCCTGAGCGTCTGAGATGTTAGTATTA640.1365391590041175No Hit
GTTCTAGGAATAATGGGGGAAGTATGTAGGAGTTGAAGATTAGTCCGCCG640.1365391590041175No Hit
AGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCCCAACCGA620.13227231028523884No Hit
CCCTAAGATAGAGGAGACACCTGCTAGGTGTAAGGAGAAGATGGTTAGGT620.13227231028523884No Hit
GCTCTAGACAGTAGCATGCAGTCCCACAACTTGTACCAGCATCCCCAGCG610.1301388859257995No Hit
ATGTAGGAGTTGAAGATTAGTCCGCCGTAGTCGGTGTACTCGTAGGTTCA600.12800546156636017No Hit
GATTATTACAAATGCATGGGCTGTGACGATAACGTTGTAGATGTGGTCGT590.1258720372069208No Hit
CGCCATATCGGGGGCACCGATTATTAGGGGAACTAGTCAGTTGCCAAAGC580.1237386128474815No Hit
GTCTAGGCCATATGTGTTGGAGATTGAGACTAGTAGGGCTAGGCCCACCG570.12160518848804217No Hit
GGATCACTTGGCCCTTTCTCTTCTTATCTCCTCCCAGTTCAAAATGCTTG550.1173383397691635No Hit
GCTCATGAGTGCAAGACGTCTTGTGATGTAATTATTATACGAATGGGGGC550.1173383397691635No Hit
CGTCTGTTATGTAAAGGATGCGTAGGGATGGGAGGGCGATGAGGACTAGG540.11520491540972415No Hit
AGCTTATGTTGTTTATGCGGGGAAACGCCATATCGGGGGCACCGATTATT540.11520491540972415No Hit
TGCATGGGCTGTGACGATAACGTTGTAGATGTGGTCGTTACCTAGAAGGT530.11307149105028481No Hit
CTAGTCAGTTGCCAAAGCCTCCGATTATGATGGGTATTACTATGAAGAAG520.11093806669084548No Hit
GAACTAGTCAGTTGCCAAAGCCTCCGATTATGATGGGTATTACTATGAAG520.11093806669084548No Hit
GGATGATGGCGGGCAGGATAGTTCAGACGGTTTCTATTTCCTGAGCGTCT520.11093806669084548No Hit
CTTATGTTGTTTATGCGGGGAAACGCCATATCGGGGGCACCGATTATTAG500.1066712179719668No Hit
GGCTGTGACGATAACGTTGTAGATGTGGTCGTTACCTAGAAGGTTGCCTG470.1002709448936488No Hit
GTCCAGGGCAGAGGACCAACATGGGCATTTTGTTTATGAGCAAGGTGGGT470.1002709448936488No Hit
GACTAGGATGATGGCGGGCAGGATAGTTCAGACGGTTTCTATTTCCTGAG470.1002709448936488No Hit
CTGTTCAACCTGTTCCTGCTCCGGCCTCCACTATAGCAGATGCGAGCAGG470.1002709448936488No Hit
TCTCAGAGGTGATCGGCGATCAGAGGGCGATGAAGTTCTAGATCCATTGA470.1002709448936488No Hit
GTTCAGACGGTTTCTATTTCCTGAGCGTCTGAGATGTTAGTATTAGTTAG470.1002709448936488No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)