FastQCFastQC Report
Tue 7 May 2024
EGAF00007823334

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007823334
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7705
Total Bases1.1 Mbp
Sequences flagged as poor quality0
Sequence length151
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTATAAGAGACAGATTGCGCAATCTGTCTCTTATACACATCTGACGCT1772.2972096041531476No Hit
GTATAAGAGACAGATTGCGCAATCTGTCTCTTATACACATCTGACGCTGC680.8825438027255029No Hit
GATGTGTATAAGAGACAGATTGCGCAATCTGTCTCTTATACACATCTGAC210.27255029201817005No Hit
GGAATTGTCTGCAGTGCTAATCTTGCAAACAAAATATCAATCTCTATCCC180.23361453601557428No Hit
GGCTGTGATTTTCTTGCCATTCTTGATCAGCTGGACCCTTACACACTTCC160.20765736534717716No Hit
GCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT140.18170019467878No Hit
GGATCACTTGGCCCTTTCTCTTCTTATCTCCTCCCAGTTCAAAATGCTTG120.15574302401038287No Hit
GTGTAAGACTTCTTCTTCCTTTTCTTAGCACCACCACGAAGTCTCAACAC110.1427644386761843No Hit
GCCCCACTGTGGCTGGGGCCTGTGGCCGTGCTGTTTGACTGGTGAAGCCA100.12978585334198572No Hit
GTATAGGTGACGGCGTCTCGAATAACGTTCTCTAAGAAAACCTTAAGCAC90.11680726800778714No Hit
CACTTGTTGTCTGCGGGCTCAAAGCCCTCCACAGTACCCTTCTTTGGAAT90.11680726800778714No Hit
GGTGTATGATCTCGAAGGCATGCTTGACGATGCGCACAGTCATGAGCTTC90.11680726800778714No Hit
ACATCCTGGGCAGCCAACATAGCAGCATATGGTGAGGATTCATCTCGGTC90.11680726800778714No Hit
GTAATGTAGCTTCACATACAGCTTGGGAAGCACATAGGCATCGAAGACGC90.11680726800778714No Hit
CATCCTGGGCAGCCAACATAGCAGCATATGGTGAGGATTCATCTCGGTCT80.10382868267358858No Hit
CCTTCAGACAGCATAAATATGTGTGCCATCTCATGTGCAATTCCTTATAG80.10382868267358858No Hit
GTACAGGGAGAACTCACAGCTCCAAGAGCTTCCCTCCAAATTATGATGAA80.10382868267358858No Hit
GTGGAAGCAGCTCGCGTGTAGAACCAGTTCTCATCGTAGGGAGCAAGCTC80.10382868267358858No Hit
AGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCCCAACCGA80.10382868267358858No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)