FastQCFastQC Report
Tue 7 May 2024
EGAF00007823335

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007823335
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3904
Total Bases589.5 kbp
Sequences flagged as poor quality0
Sequence length151
%GC62

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGCGCAATCTGTCTCTTATACACCTGTCTCTTATACACATCTCCGAGC2145.48155737704918No Hit
ATTGCGCAATCTGTCTCTTATACCTGTCTCTTATACACATCTCCGAGCCC1092.7920081967213113No Hit
ATTGCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA280.7172131147540983No Hit
ATTGCGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACTAGCTCCAG180.4610655737704918No Hit
ATTGCGCAATCTGTCTCTTATACACATCCTGTCTCTTATACACATCTCCG170.4354508196721311No Hit
GGGGGCTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG130.3329918032786885No Hit
GGGGTGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG90.2305327868852459No Hit
ATTGCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCGTATGCCTGT70.17930327868852458No Hit
ATTGCGCAATGTATGCTGCCTGTCTCTTATACACATCTCCGAGCCCACGA70.17930327868852458No Hit
ATTGCGCAAAAACTGTCTCTTATACACATCTCCGAGCCCACGAGACTAGC60.15368852459016394No Hit
ATTGCGCAATGTAGGTATAGGGATGGCTCAGATTGAACGCTGGCGGCAGG60.15368852459016394No Hit
ATTGCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCGTATGCCTGGG60.15368852459016394No Hit
ATTGCGCAATGTATGCCTGTCTCTTATACACATCTCCGAGCCCACGAGAC60.15368852459016394No Hit
ATTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACTAGCTCCAGAAT60.15368852459016394No Hit
ATCTGTGTCTTATACACATCTCCGAGCCCACGAGACTAGCTCCAGAATCG50.12807377049180327No Hit
ATTGCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCGTATGCTGCTG50.12807377049180327No Hit
ATTGCGCAATCTGTCTCTTATACACCTGTGTCTTATACACATCTCCGAGC40.10245901639344263No Hit
ATCTGTCTCTTATACACATCTCCGAGCCCACGAGACTAGCTCCAGAATCG40.10245901639344263No Hit
GGGGGGTGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40.10245901639344263No Hit
ATTGCGCAATCTGTCTCTTATACACCTGGCTCTTATACACATCTCCGAGC40.10245901639344263No Hit
GGGGTCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40.10245901639344263No Hit
CGTCTGTTGTGTATAAGAGACAGATTGCGCAAAAAAAAAAAAAAAAAAAA40.10245901639344263No Hit
ATTGCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAA40.10245901639344263No Hit
ATTGCGCACTGTCTCTTATACACATCTCCGAGCCCACGAGACTAGCTCCA40.10245901639344263No Hit
ATTGCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCGTATGCCTGTC40.10245901639344263No Hit
GGGGGCGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40.10245901639344263No Hit
ATTGCGCAATGTATGCTCTGTCTCTTATACACATCTCCGAGCCCACGAGA40.10245901639344263No Hit
ATTGCGCAATCTGTCTCTTATACCTGGCTCTTATACACATCTCCGAGCCC40.10245901639344263No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)