FastQCFastQC Report
Wed 8 May 2024
EGAF00007823358

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007823358
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences266101
Total Bases40.1 Mbp
Sequences flagged as poor quality0
Sequence length151
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAGTAGGAGAGAGGGAGGTAAGAGTCAGAAGCTTATGTTGTTTATGCGG6870.2581726487311209No Hit
GAGTAGGAGAGAGGGAGGTAAGAGTCAGAAGCTTATGTTGTTTATGCGGG4010.1506946610497518No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGAACGTATACTCGTGTA3000.11273914791752003No Hit
GTATTACTATGAAGAAGATTATTACAAATGCATGGGCTGTGACGATAACG2900.10898117632026938No Hit
GTGCATATTGGCGGCGCACGCCTCATTACGATTCGCCTGCTTGCTTCTCC2850.10710219052164403No Hit
GGCGCGGCCTTCGTTGTCAGTAGTTCTTTGATGTGAAAGGGGCAGCACAG2700.10146523312576804No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)