FastQCFastQC Report
Mon 16 Jan 2023
EGAF00007823377

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007823377
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1102
Sequences flagged as poor quality0
Sequence length151
%GC78

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGCGCAATCTGTCTCTTATACACCTGTCTCTTATACACATCTCCGAGC837.531760435571688No Hit
ATTGCGCAATCTGTCTCTTATACCTGTCTCTTATACACATCTCCGAGCCC252.268602540834846No Hit
ATTGCGCAATCTGTCTCTTATACACATCCTGTCTCTTATACACATCTCCG211.9056261343012704No Hit
GGGGGCTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG70.6352087114337568No Hit
GGGGTGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60.5444646098003629No Hit
GGGCGCTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50.4537205081669692No Hit
GGGGGGTGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40.3629764065335753No Hit
ATTGCGCAATCTGTCTCTTATACACCTGGCTCTTATACACATCTCCGAGC40.3629764065335753No Hit
ATTGCGCAATCTGTCTCTTATACACTGTCTCTTATACACATCTCCGAGCC40.3629764065335753No Hit
GTGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30.27223230490018147No Hit
ATTGCGCAATCTGTCTCTTATACCTGGCTCTTATACACATCTCCGAGCCC30.27223230490018147No Hit
ATTGCGCAATATGTCTCTTATACCTGTCTCTTATACACATCTCCGAGCCC30.27223230490018147No Hit
GGGGGTTGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20.18148820326678766No Hit
GCGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20.18148820326678766No Hit
ATTGCGCAATCTGTCTCTTATACACATCCTGGCTCTTATACACATCTCCG20.18148820326678766No Hit
ATTGCGCAAGCAGAAGACGGCATACGAGATTCTGACTGTGACTGGAGTTC20.18148820326678766RNA PCR Primer, Index 40 (96% over 29bp)
GCGGTGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20.18148820326678766No Hit
ATTGCGCAATCTGTCTCTTATACACCTGTCTCGTATACACATCTCCGAGC20.18148820326678766No Hit
GGGCTTGGGGGGGGGGGGGGCCGGGGGGGGGGGGGGGGGGGGGGTGGGGG20.18148820326678766No Hit
GTGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20.18148820326678766No Hit
ATTGCGCAATCTGTCTCTTATACACCTGTCTCTGATACACATCTCCGAGC20.18148820326678766No Hit
GCGTGCGGGCTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20.18148820326678766No Hit
ATTGCGCAATCTGTCTCTTATACACCAGTCTCTTATACACATCTCCGAGC20.18148820326678766No Hit
GCCGTCGGGGTGGGGGGGGTTTGGGGGGGGGGGGGGGGGGGGGGGGGGGG20.18148820326678766No Hit
GGGGGATGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20.18148820326678766No Hit
GGGGTGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20.18148820326678766No Hit
GGGGGAGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20.18148820326678766No Hit
GGGGGCTGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20.18148820326678766No Hit
ATTGCGCAATCTGTCTCTTATACCTGTCTGTTATACACATCTCCGAGCCC20.18148820326678766No Hit
GGGGGCTGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20.18148820326678766No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)