FastQCFastQC Report
Wed 8 May 2024
EGAF00007823403

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007823403
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences268718
Total Bases40.5 Mbp
Sequences flagged as poor quality0
Sequence length151
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCTGTCTCTTATACACATCTCCGAGCCCACGAGACTACGCTACTAATCG4840.18011446944380355No Hit
ATCTGTCTCTTATACACATCTCCGAGCCCACGAGACTACGCTACTAATCT4030.14997134542531576No Hit
ATTGCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3300.12280532007532059No Hit
ATTGCGCAATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTACC3010.11201333740203485No Hit
ATTGCGCAATGCCCCTCATTTACATAAATATTATACTAGCATTTACCATC2880.10717555206573434No Hit
ATTGCGCAATGAGAGACTCGGGGCTCTCGTTCCCCGGCCATCTTAGCGGC2760.1027099040629954No Hit
ATTGCGCAATGGCTTTAGGGGGGGCGTCTTGTTCTTGCCTGGTGTCGGTG2740.10196562939587224No Hit
ATTGCGCAATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCC2700.10047708006162594No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)