FastQCFastQC Report
Thu 19 Jan 2023
EGAF00007823404

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007823404
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences268718
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAGTAGGAGAGAGGGAGGTAAGAGTCAGAAGCTTATGTTGTTTATGCGG10530.3918606122403412No Hit
ATCTGTCTCTTATACACATCTGACGCTGCCGACGATAAGGTGTCAGTGTA9900.3684159602259618No Hit
GAGTAGGAGAGAGGGAGGTAAGAGTCAGAAGCTTATGTTGTTTATGCGGG6460.24040071748077912No Hit
GTATTACTATGAAGAAGATTATTACAAATGCATGGGCTGTGACGATAACG4650.17304386010613357No Hit
GGACTAGGATGATGGCGGGCAGGATAGTTCAGACGGTTTCTATTTCCTGA4250.15815836676367048No Hit
GTATGTAGGAGTTGAAGATTAGTCCGCCGTAGTCGGTGTACTCGTAGGTT3550.13210875341436004No Hit
CTATAGCAGATGCGAGCAGGAGTAGGAGAGAGGGAGGTAAGAGTCAGAAG3470.1291316547458674No Hit
CCACTATAGCAGATGCGAGCAGGAGTAGGAGAGAGGGAGGTAAGAGTCAG3410.12689883074449793No Hit
GTACCATTGGTGGCCAATTGATTTGATGGTAAGGGAGGGATCGTTGACCT3370.12541028141025162No Hit
GTTCAGTACCATTGGTGGCCAATTGATTTGATGGTAAGGGAGGGATCGTT3320.12354959474244376No Hit
GCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3300.12280532007532059No Hit
AGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTATAGCAGATG2800.10419845339724172No Hit
TGCATGGGCTGTGACGATAACGTTGTAGATGTGGTCGTTACCTAGAAGGT2770.103082041396557No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)