FastQCFastQC Report
Tue 7 May 2024
EGAF00007823521

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007823521
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2278
Total Bases343.9 kbp
Sequences flagged as poor quality0
Sequence length151
%GC65

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGCGCAATCTGTCTCTTATACACCTGTCTCTTATACACATCTCCGAGC1596.97980684811238No Hit
ATTGCGCAATCTGTCTCTTATACCTGTCTCTTATACACATCTCCGAGCCC592.5899912203687445No Hit
ATTGCGCAATGGTCAAGAGGGGTAAGGGCGTATGGGGGATGCCTTGGCTC231.009657594381036No Hit
ATTGCGCAATGCAAGGGTAGGGAGAATTCAGTGTAGTTTATACATTTCGA170.7462686567164178No Hit
ATTGCGCAATCTGTCTCTTATACACATCCTGTCTCTTATACACATCTCCG170.7462686567164178No Hit
ATTGCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA100.4389815627743635No Hit
GGGGTGTGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG70.30728709394205445No Hit
GGGGTGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60.2633889376646181No Hit
GGGGGCTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60.2633889376646181No Hit
GGGCGCTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50.21949078138718175No Hit
GGGGGTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50.21949078138718175No Hit
ATTGCGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACTTAGGCATC40.17559262510974538No Hit
ATTGCGCAATGGGGTAGGGGGGGTTTGGCGGAAATTTTTTGTTATGATGT40.17559262510974538No Hit
GGGGGGTGGCTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40.17559262510974538No Hit
ATTGCGCAATCTGTCTCTTATACACCTGTCTCTTATACACATCACCGAGC40.17559262510974538No Hit
ATTGCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAA30.13169446883230904No Hit
ATTGCGCAATGAAGAGGGGGGGGTGGGATAAAGGTGGTGTGATAAGAGTT30.13169446883230904No Hit
ATTGCGCAATCTGTCTCTTATACACCTGTCTCTTATACACAACTCCGAGC30.13169446883230904No Hit
ATTGCGCAATCTGTCTCTTATACACCTGTCTCTTATACACATCTCCGATC30.13169446883230904No Hit
GGGGGCGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30.13169446883230904No Hit
GGGGTGTGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30.13169446883230904No Hit
GGGGGGTGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30.13169446883230904No Hit
GGGGTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30.13169446883230904No Hit
CGTCTGTTGTGTATAAGAGACAGATTGCGCAAAAAAAAAAAAAAAAAAAA30.13169446883230904No Hit
GGCGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30.13169446883230904No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)