FastQCFastQC Report
Tue 7 May 2024
EGAF00007823528

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007823528
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13836
Total Bases2 Mbp
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTATAAGAGACAGATTGCGCAATCTGTCTCTTATACACATCTGACGCT1290.9323503902862099No Hit
GCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1190.8600751662330153No Hit
GGAGTAGGAGAGAGGGAGGTAAGAGTCAGAAGCTTATGTTGTTTATGCGG950.6866146285053484No Hit
GTATAAGAGACAGATTGCGCAATCTGTCTCTTATACACATCTGACGCTGC560.4047412546978896No Hit
GAGTAGGAGAGAGGGAGGTAAGAGTCAGAAGCTTATGTTGTTTATGCGGG500.3613761202659728No Hit
TATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCCCCGGCCGGGGCCGGA300.21682567215958368No Hit
CCCCCCGGCCGGGGCCGGAGAGGGGCTGACCGGGTTGGTTTTGATCTGAT280.2023706273489448No Hit
CATCAGCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT270.19514310494362533No Hit
GCAGCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT270.19514310494362533No Hit
GTATTACTATGAAGAAGATTATTACAAATGCATGGGCTGTGACGATAACG240.17346053772766695No Hit
CCACTATAGCAGATGCGAGCAGGAGTAGGAGAGAGGGAGGTAAGAGTCAG230.1662330153223475No Hit
GGGGCTGACCGGGTTGGTTTTGATCTGATAAATGCACGCATCCCCCCCGC230.1662330153223475No Hit
CTATAGCAGATGCGAGCAGGAGTAGGAGAGAGGGAGGTAAGAGTCAGAAG210.1517779705117086No Hit
CCATGGTAGGCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCG180.13009540329575023No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG180.13009540329575023No Hit
GATGTGTATAAGAGACAGATTGCGCAATCTGTCTCTTATACACATCTGAC180.13009540329575023No Hit
GAGAGGGGCTGACCGGGTTGGTTTTGATCTGATAAATGCACGCATCCCCC170.12286788089043077No Hit
AGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTATAGCAGATG160.11564035848511131No Hit
GCATACGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTT160.11564035848511131No Hit
CCTTTTCTATCTGAGCTCTTCCTCCTCCACATCACAGCAGCGACCACAGC150.10841283607979184No Hit
CCCTAAGATAGAGGAGACACCTGCTAGGTGTAAGGAGAAGATGGTTAGGT140.1011853136744724No Hit
GGAGAGAGGGAGGTAAGAGTCAGAAGCTTATGTTGTTTATGCGGGGAAAC140.1011853136744724No Hit
GAGTAGTTCCCTGCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCC140.1011853136744724No Hit
ATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCCCCGGCCGGGGCCGGAG140.1011853136744724No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)